STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK77360.1Helix-turn-helix domain-containing protein. (114 aa)    
Predicted Functional Partners:
SEK77318.1
Serine/threonine-protein kinase HipA.
 
 
 0.981
SEK58453.1
Predicted ABC-type ATPase.
  
 
 
 0.662
SEM26279.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.658
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.570
SEL92785.1
Tetratricopeptide repeat-containing protein.
    
 0.486
SEK59078.1
Hypothetical protein.
    
 
 0.480
SEK59112.1
Hypothetical protein.
    
 
 0.480
SEK59140.1
Hypothetical protein.
    
 
 0.480
SEK59202.1
Hypothetical protein.
    
 
 0.480
SEK82044.1
Protein of unknown function.
  
     0.426
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.