STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL05947.1ABC-2 type transport system permease protein. (374 aa)    
Predicted Functional Partners:
SEL06026.1
ABC-2 type transport system ATP-binding protein.
 
 0.992
SEL06061.1
ABC-type multidrug transport system, ATPase component.
 
 0.992
SEM04299.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.911
SEL95573.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.896
SEL06087.1
HlyD family secretion protein.
 
  
 0.894
SEL85356.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.883
SEL06116.1
Outer membrane protein TolC.
 
     0.869
SEL05990.1
ABC-2 type transport system permease protein.
 
  
 
0.863
SEK84852.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.851
SEL83575.1
Lipopolysaccharide export system ATP-binding protein.
   
  0.819
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.