STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL06478.1HlyD family secretion protein. (390 aa)    
Predicted Functional Partners:
SEL06515.1
ATP-binding cassette, subfamily B.
 
 0.969
SEM00029.1
ATP-binding cassette, subfamily B.
 
 0.923
SEK76677.1
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39.
 
 0.760
SEL95292.1
ABC transporter transmembrane region.
  
 0.652
SEK42096.1
Outer membrane protein TolC.
  
  0.633
SEK40997.1
Outer membrane protein TolC.
  
  0.594
SEL03844.1
Outer membrane protein TolC.
  
  0.594
SEL95236.1
Outer membrane protein TolC.
  
  0.585
SEL16062.1
Outer membrane protein TolC.
  
  0.582
SEK65887.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
 0.572
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.