STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL14457.1Siderophore synthetase component. (603 aa)    
Predicted Functional Partners:
SEL14247.1
Lysine N6-hydroxylase.
 
 
 0.971
SEL14278.1
Acetyltransferase (GNAT) domain-containing protein.
 
 
 0.908
SEL14313.1
L-2,4-diaminobutyrate decarboxylase.
 
  
 0.878
SEL14395.1
Taurine catabolism dioxygenase TauD, TfdA family.
 
     0.784
SEL14493.1
TonB-dependent Receptor Plug Domain.
  
  
 0.703
SEL14430.1
Siderophore synthetase component.
 
    
0.695
SEL33717.1
Diaminopimelate decarboxylase.
  
 
 0.557
SEL14525.1
Uncharacterized membrane protein.
       0.531
SEL14161.1
Acyl carrier protein.
  
 
 0.529
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.