STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL15298.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (622 aa)    
Predicted Functional Partners:
SEL07591.1
Hypothetical protein.
 
  
  0.769
SEM41560.1
Hypothetical protein.
  
     0.766
SEL00025.1
Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.744
SEL72031.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.744
SEK71929.1
Sialidase-1.
  
     0.713
SEL94931.1
Transcriptional regulator, LytTR family.
  
     0.695
SEM00458.1
Exodeoxyribonuclease-3.
  
  
  0.685
SEM42492.1
4-alpha-glucanotransferase/malto- oligosyltrehalose synthase,TIGR02401.
    
 0.666
SEL91673.1
Ricin-type beta-trefoil lectin domain-like; Belongs to the glycosyl hydrolase 43 family.
  
     0.628
SEM39378.1
Starch-binding associating with outer membrane.
  
  
  0.595
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.