Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEK68448.1 | SEK94083.1 | SAMN05661044_00890 | SAMN05661044_01559 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Exonuclease SbcC. | 0.637 |
SEK68448.1 | SEL34429.1 | SAMN05661044_00890 | SAMN05661044_02223 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Exodeoxyribonuclease-5. | 0.584 |
SEK68448.1 | SEL67696.1 | SAMN05661044_00890 | SAMN05661044_03077 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.582 |
SEK68448.1 | SEM04164.1 | SAMN05661044_00890 | SAMN05661044_04095 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.980 |
SEK94083.1 | SEK68448.1 | SAMN05661044_01559 | SAMN05661044_00890 | Exonuclease SbcC. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.637 |
SEK94083.1 | SEL34429.1 | SAMN05661044_01559 | SAMN05661044_02223 | Exonuclease SbcC. | Exodeoxyribonuclease-5. | 0.578 |
SEK94083.1 | SEL43312.1 | SAMN05661044_01559 | SAMN05661044_02474 | Exonuclease SbcC. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.637 |
SEK94083.1 | SEM04164.1 | SAMN05661044_01559 | SAMN05661044_04095 | Exonuclease SbcC. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.920 |
SEL34429.1 | SEK68448.1 | SAMN05661044_02223 | SAMN05661044_00890 | Exodeoxyribonuclease-5. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.584 |
SEL34429.1 | SEK94083.1 | SAMN05661044_02223 | SAMN05661044_01559 | Exodeoxyribonuclease-5. | Exonuclease SbcC. | 0.578 |
SEL34429.1 | SEL34498.1 | SAMN05661044_02223 | SAMN05661044_02225 | Exodeoxyribonuclease-5. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 0.685 |
SEL34429.1 | SEL43312.1 | SAMN05661044_02223 | SAMN05661044_02474 | Exodeoxyribonuclease-5. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.584 |
SEL34429.1 | SEL67696.1 | SAMN05661044_02223 | SAMN05661044_03077 | Exodeoxyribonuclease-5. | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.879 |
SEL34429.1 | SEL92785.1 | SAMN05661044_02223 | SAMN05661044_03765 | Exodeoxyribonuclease-5. | Tetratricopeptide repeat-containing protein. | 0.573 |
SEL34429.1 | SEM04164.1 | SAMN05661044_02223 | SAMN05661044_04095 | Exodeoxyribonuclease-5. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.959 |
SEL34429.1 | SEM27257.1 | SAMN05661044_02223 | SAMN05661044_04756 | Exodeoxyribonuclease-5. | Type I restriction enzyme R protein N terminus (HSDR_N). | 0.581 |
SEL34429.1 | purL | SAMN05661044_02223 | SAMN05661044_00909 | Exodeoxyribonuclease-5. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.572 |
SEL34429.1 | truB | SAMN05661044_02223 | SAMN05661044_05422 | Exodeoxyribonuclease-5. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.895 |
SEL34498.1 | SEL34429.1 | SAMN05661044_02225 | SAMN05661044_02223 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Exodeoxyribonuclease-5. | 0.685 |
SEL43312.1 | SEK94083.1 | SAMN05661044_02474 | SAMN05661044_01559 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Exonuclease SbcC. | 0.637 |
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