STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL39093.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
SEK48406.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.693
SEL39057.1
AraC-like ligand binding domain-containing protein.
       0.693
SEM07417.1
Hypothetical protein.
  
     0.620
SEL99259.1
Hypothetical protein.
  
     0.597
SEL47306.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.590
SEL47335.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.584
SEL99278.1
Starch-binding associating with outer membrane.
  
     0.564
SEK82687.1
Hypothetical protein.
  
     0.552
SEM46658.1
Hypothetical protein.
  
     0.533
SEL99310.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.494
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.