STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL42432.1Protein of unknown function. (252 aa)    
Predicted Functional Partners:
SEM38832.1
Protein of unknown function.
     0.971
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.947
SEL42408.1
Hypothetical protein.
       0.773
SEK65022.1
Predicted dehydrogenase.
  
     0.761
SEM03093.1
Protein of unknown function.
 
     0.730
SEL47580.1
Predicted dehydrogenase.
  
     0.725
SEL53894.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.704
SEL47375.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.703
SEL42549.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.686
SEM42355.1
Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.666
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.