STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL54587.1Transcriptional regulator, DeoR family. (257 aa)    
Predicted Functional Partners:
SEL54558.1
L-fucose isomerase.
 
   
 0.838
SEL54505.1
Transketolase.
 
  
  0.756
SEL54534.1
Transketolase.
 
  
  0.744
SEL54452.1
Predicted lipoprotein.
 
     0.685
SEL54429.1
Ribose transport system ATP-binding protein.
 
   
 0.644
SEL54485.1
Ribose transport system substrate-binding protein.
 
  
 0.644
SEL54400.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.615
SEL54370.1
Glycerol kinase; Belongs to the FGGY kinase family.
  
  
 0.520
SEL44892.1
Glycerol-3-phosphate dehydrogenase.
 
  
 0.439
SEK71570.1
Ribose 5-phosphate isomerase B.
  
 
 0.407
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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