STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL84942.1Flagellum-specific peptidoglycan hydrolase FlgJ. (295 aa)    
Predicted Functional Partners:
SEL84906.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
 
   
0.850
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
 0.814
SEL84872.1
Predicted O-methyltransferase YrrM.
       0.768
SEM26279.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
 0.743
SEM26325.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.739
SEM26354.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.739
SEL84858.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.737
SEL84982.1
Hypothetical protein.
 
     0.713
SEK96487.1
Protein of unknown function.
  
     0.696
SEM07036.1
Putative auto-transporter adhesin, head GIN domain.
  
 
   0.679
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.