STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL99310.1TonB-linked outer membrane protein, SusC/RagA family. (994 aa)    
Predicted Functional Partners:
SEL99278.1
Starch-binding associating with outer membrane.
 
     0.930
SEL99259.1
Hypothetical protein.
 
     0.886
SEL68867.1
Starch-binding associating with outer membrane.
  
     0.746
SEL50944.1
Starch-binding associating with outer membrane.
  
     0.733
SEL91546.1
Starch-binding associating with outer membrane.
  
     0.732
SEL99108.1
FAD dependent oxidoreductase.
 
     0.721
SEL69818.1
Starch-binding associating with outer membrane.
  
     0.714
SEL99081.1
Transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.713
SEK75206.1
Starch-binding associating with outer membrane.
  
     0.711
SEL47015.1
Starch-binding associating with outer membrane.
  
     0.711
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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