Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEL39703.1 | SEM10772.1 | SAMN05661044_02371 | SAMN05661044_04269 | Arginine decarboxylase. | Homospermidine synthase (spermidine-specific). | 0.587 |
SEM10585.1 | SEM10612.1 | SAMN05661044_04263 | SAMN05661044_04264 | Hypothetical protein. | Cytochrome C oxidase, cbb3-type, subunit III. | 0.999 |
SEM10585.1 | SEM10644.1 | SAMN05661044_04263 | SAMN05661044_04265 | Hypothetical protein. | Protein of unknown function. | 0.999 |
SEM10585.1 | SEM10679.1 | SAMN05661044_04263 | SAMN05661044_04266 | Hypothetical protein. | Prokaryotic molybdopterin-containing oxidoreductase family, membrane subunit. | 0.999 |
SEM10585.1 | SEM10710.1 | SAMN05661044_04263 | SAMN05661044_04267 | Hypothetical protein. | Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit. | 0.999 |
SEM10585.1 | SEM10741.1 | SAMN05661044_04263 | SAMN05661044_04268 | Hypothetical protein. | Cytochrome c553. | 0.999 |
SEM10585.1 | SEM10772.1 | SAMN05661044_04263 | SAMN05661044_04269 | Hypothetical protein. | Homospermidine synthase (spermidine-specific). | 0.601 |
SEM10585.1 | efp | SAMN05661044_04263 | SAMN05661044_04272 | Hypothetical protein. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.411 |
SEM10585.1 | rplF | SAMN05661044_04263 | SAMN05661044_04078 | Hypothetical protein. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
SEM10612.1 | SEM10585.1 | SAMN05661044_04264 | SAMN05661044_04263 | Cytochrome C oxidase, cbb3-type, subunit III. | Hypothetical protein. | 0.999 |
SEM10612.1 | SEM10644.1 | SAMN05661044_04264 | SAMN05661044_04265 | Cytochrome C oxidase, cbb3-type, subunit III. | Protein of unknown function. | 0.999 |
SEM10612.1 | SEM10679.1 | SAMN05661044_04264 | SAMN05661044_04266 | Cytochrome C oxidase, cbb3-type, subunit III. | Prokaryotic molybdopterin-containing oxidoreductase family, membrane subunit. | 0.999 |
SEM10612.1 | SEM10710.1 | SAMN05661044_04264 | SAMN05661044_04267 | Cytochrome C oxidase, cbb3-type, subunit III. | Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit. | 0.999 |
SEM10612.1 | SEM10741.1 | SAMN05661044_04264 | SAMN05661044_04268 | Cytochrome C oxidase, cbb3-type, subunit III. | Cytochrome c553. | 0.998 |
SEM10612.1 | SEM10772.1 | SAMN05661044_04264 | SAMN05661044_04269 | Cytochrome C oxidase, cbb3-type, subunit III. | Homospermidine synthase (spermidine-specific). | 0.442 |
SEM10644.1 | SEM10585.1 | SAMN05661044_04265 | SAMN05661044_04263 | Protein of unknown function. | Hypothetical protein. | 0.999 |
SEM10644.1 | SEM10612.1 | SAMN05661044_04265 | SAMN05661044_04264 | Protein of unknown function. | Cytochrome C oxidase, cbb3-type, subunit III. | 0.999 |
SEM10644.1 | SEM10679.1 | SAMN05661044_04265 | SAMN05661044_04266 | Protein of unknown function. | Prokaryotic molybdopterin-containing oxidoreductase family, membrane subunit. | 0.999 |
SEM10644.1 | SEM10710.1 | SAMN05661044_04265 | SAMN05661044_04267 | Protein of unknown function. | Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit. | 0.999 |
SEM10644.1 | SEM10741.1 | SAMN05661044_04265 | SAMN05661044_04268 | Protein of unknown function. | Cytochrome c553. | 0.998 |
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