STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM19933.1Hypothetical protein. (525 aa)    
Predicted Functional Partners:
SEM08749.1
OstA-like protein.
  
   
 0.739
SEL68135.1
Ig-like domain-containing protein.
  
     0.724
SEM52525.1
Family of unknown function.
  
   
 0.721
SEL64629.1
Long-chain fatty acid transport protein.
  
     0.704
SEM37669.1
Hypothetical protein.
  
     0.693
SEM26305.1
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA).
  
   
 0.689
SEM30000.1
DoxX protein.
  
     0.685
SEM29883.1
Tetratricopeptide repeat-containing protein.
  
     0.683
SEL33133.1
Outer membrane protein assembly factor BamA.
  
   
 0.682
SEL84440.1
Lipopolysaccharide-assembly.
  
     0.678
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.