STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM39034.1Glycosyl hydrolases family 2, sugar binding domain. (885 aa)    
Predicted Functional Partners:
SEM39455.1
Lysophospholipase L1.
  0.879
SEM39117.1
Lysophospholipase L1.
 
  0.867
SEM39094.1
Rhamnogalacturonyl hydrolase YesR.
 
     0.835
SEL46033.1
Lysophospholipase L1.
 
 0.812
SEL56456.1
Protein of unknown function.
 
 0.808
SEM39061.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
     0.808
SEL46003.1
Pectinesterase.
  
 0.802
SEM54583.1
Starch-binding associating with outer membrane.
  
 
  0.756
SEM39144.1
Hypothetical protein.
 
     0.702
SEM39172.1
Protein of unknown function, DUF608.
 
    0.676
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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