Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM12096.1 | SEM56589.1 | SAMN05661044_04322 | SAMN05661044_05513 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | Peroxiredoxin. | 0.782 |
SEM36663.1 | SEM56589.1 | SAMN05661044_04975 | SAMN05661044_05513 | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Peroxiredoxin. | 0.616 |
SEM56589.1 | SEM12096.1 | SAMN05661044_05513 | SAMN05661044_04322 | Peroxiredoxin. | Peroxiredoxin (alkyl hydroperoxide reductase subunit C). | 0.782 |
SEM56589.1 | SEM36663.1 | SAMN05661044_05513 | SAMN05661044_04975 | Peroxiredoxin. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.616 |
SEM56589.1 | SEM56623.1 | SAMN05661044_05513 | SAMN05661044_05514 | Peroxiredoxin. | Protein-disulfide isomerase. | 0.840 |
SEM56589.1 | SEM56652.1 | SAMN05661044_05513 | SAMN05661044_05515 | Peroxiredoxin. | Hypothetical protein. | 0.469 |
SEM56623.1 | SEM56589.1 | SAMN05661044_05514 | SAMN05661044_05513 | Protein-disulfide isomerase. | Peroxiredoxin. | 0.840 |
SEM56623.1 | SEM56652.1 | SAMN05661044_05514 | SAMN05661044_05515 | Protein-disulfide isomerase. | Hypothetical protein. | 0.469 |
SEM56652.1 | SEM56589.1 | SAMN05661044_05515 | SAMN05661044_05513 | Hypothetical protein. | Peroxiredoxin. | 0.469 |
SEM56652.1 | SEM56623.1 | SAMN05661044_05515 | SAMN05661044_05514 | Hypothetical protein. | Protein-disulfide isomerase. | 0.469 |