Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ66842.1 | SDJ69624.1 | SAMN05216243_0193 | SAMN05216243_0362 | ATP-dependent DNA helicase RecQ. | 5'-3' exonuclease. | 0.867 |
SDJ66842.1 | SDJ89044.1 | SAMN05216243_0193 | SAMN05216243_1321 | ATP-dependent DNA helicase RecQ. | DNA repair exonuclease SbcCD nuclease subunit. | 0.857 |
SDJ66842.1 | SDK23181.1 | SAMN05216243_0193 | SAMN05216243_2452 | ATP-dependent DNA helicase RecQ. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.715 |
SDJ66842.1 | mutL | SAMN05216243_0193 | SAMN05216243_0429 | ATP-dependent DNA helicase RecQ. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.861 |
SDJ66842.1 | mutS | SAMN05216243_0193 | SAMN05216243_0430 | ATP-dependent DNA helicase RecQ. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.702 |
SDJ66842.1 | sbcD | SAMN05216243_0193 | SAMN05216243_0297 | ATP-dependent DNA helicase RecQ. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.862 |
SDJ69624.1 | SDJ66842.1 | SAMN05216243_0362 | SAMN05216243_0193 | 5'-3' exonuclease. | ATP-dependent DNA helicase RecQ. | 0.867 |
SDJ69624.1 | SDJ89044.1 | SAMN05216243_0362 | SAMN05216243_1321 | 5'-3' exonuclease. | DNA repair exonuclease SbcCD nuclease subunit. | 0.871 |
SDJ69624.1 | SDK16819.1 | SAMN05216243_0362 | SAMN05216243_2136 | 5'-3' exonuclease. | Bifunctional non-homologous end joining protein LigD. | 0.857 |
SDJ69624.1 | SDK17180.1 | SAMN05216243_0362 | SAMN05216243_2157 | 5'-3' exonuclease. | ATP-dependent DNA helicase RecQ. | 0.867 |
SDJ69624.1 | SDK23181.1 | SAMN05216243_0362 | SAMN05216243_2452 | 5'-3' exonuclease. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.978 |
SDJ69624.1 | SDK42091.1 | SAMN05216243_0362 | SAMN05216243_3092 | 5'-3' exonuclease. | DNA polymerase (family 10). | 0.846 |
SDJ69624.1 | SDK47244.1 | SAMN05216243_0362 | SAMN05216243_3275 | 5'-3' exonuclease. | Superfamily II DNA or RNA helicase. | 0.924 |
SDJ69624.1 | mutL | SAMN05216243_0362 | SAMN05216243_0429 | 5'-3' exonuclease. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.934 |
SDJ69624.1 | mutS | SAMN05216243_0362 | SAMN05216243_0430 | 5'-3' exonuclease. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.940 |
SDJ69624.1 | sbcD | SAMN05216243_0362 | SAMN05216243_0297 | 5'-3' exonuclease. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.871 |
SDJ89044.1 | SDJ66842.1 | SAMN05216243_1321 | SAMN05216243_0193 | DNA repair exonuclease SbcCD nuclease subunit. | ATP-dependent DNA helicase RecQ. | 0.857 |
SDJ89044.1 | SDJ69624.1 | SAMN05216243_1321 | SAMN05216243_0362 | DNA repair exonuclease SbcCD nuclease subunit. | 5'-3' exonuclease. | 0.871 |
SDJ89044.1 | SDK16819.1 | SAMN05216243_1321 | SAMN05216243_2136 | DNA repair exonuclease SbcCD nuclease subunit. | Bifunctional non-homologous end joining protein LigD. | 0.661 |
SDJ89044.1 | SDK17180.1 | SAMN05216243_1321 | SAMN05216243_2157 | DNA repair exonuclease SbcCD nuclease subunit. | ATP-dependent DNA helicase RecQ. | 0.857 |
page 1 of 4