Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ73727.1 | carA | SAMN05216243_0583 | SAMN05216243_0580 | Uracil permease. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.903 |
SDJ73727.1 | carA-2 | SAMN05216243_0583 | SAMN05216243_2672 | Uracil permease. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.798 |
SDJ73727.1 | carB | SAMN05216243_0583 | SAMN05216243_0579 | Uracil permease. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.898 |
SDJ73727.1 | pyrB | SAMN05216243_0583 | SAMN05216243_0582 | Uracil permease. | Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.993 |
SDJ73727.1 | pyrC | SAMN05216243_0583 | SAMN05216243_0581 | Uracil permease. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.987 |
SDJ73727.1 | pyrD | SAMN05216243_0583 | SAMN05216243_0577 | Uracil permease. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.942 |
SDJ73727.1 | pyrE | SAMN05216243_0583 | SAMN05216243_0575 | Uracil permease. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.945 |
SDJ73727.1 | pyrF | SAMN05216243_0583 | SAMN05216243_0576 | Uracil permease. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.946 |
SDJ73727.1 | pyrK | SAMN05216243_0583 | SAMN05216243_0578 | Uracil permease. | Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.914 |
SDJ73727.1 | pyrR | SAMN05216243_0583 | SAMN05216243_0584 | Uracil permease. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.986 |
carA | SDJ73727.1 | SAMN05216243_0580 | SAMN05216243_0583 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Uracil permease. | 0.903 |
carA | carB | SAMN05216243_0580 | SAMN05216243_0579 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.999 |
carA | pyrB | SAMN05216243_0580 | SAMN05216243_0582 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carA | pyrC | SAMN05216243_0580 | SAMN05216243_0581 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.996 |
carA | pyrD | SAMN05216243_0580 | SAMN05216243_0577 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.963 |
carA | pyrE | SAMN05216243_0580 | SAMN05216243_0575 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.957 |
carA | pyrF | SAMN05216243_0580 | SAMN05216243_0576 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.957 |
carA | pyrK | SAMN05216243_0580 | SAMN05216243_0578 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.978 |
carA | pyrR | SAMN05216243_0580 | SAMN05216243_0584 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.836 |
carA-2 | SDJ73727.1 | SAMN05216243_2672 | SAMN05216243_0583 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Uracil permease. | 0.798 |
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