STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ78840.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
SDJ78857.1
Hypothetical protein.
       0.634
SDJ78867.1
Hypothetical protein.
       0.584
SDJ84437.1
MFS transporter, DHA1 family, multidrug resistance protein B.
  
     0.574
SDK49051.1
Putative AdoMet-dependent methyltransferase; Could be a S-adenosyl-L-methionine-dependent methyltransferase.
  
     0.539
SDJ81819.1
Acetyltransferase (GNAT) family protein.
  
     0.513
SDK44679.1
DeoR-like helix-turn-helix domain-containing protein.
  
     0.475
SDJ98690.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.463
SDJ76446.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
  
     0.453
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.443
SDK41120.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.431
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.