STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ78949.1ABC-2 type transport system ATP-binding protein. (310 aa)    
Predicted Functional Partners:
SDJ78911.1
ABC-2 type transport system permease protein.
 
 
 0.952
SDJ78933.1
ABC-2 type transport system permease protein.
 
 
  0.952
SDJ78988.1
Signal transduction histidine kinase.
 
    0.695
SDJ76762.1
ABC-2 type transport system permease protein.
 
 0.652
SDK21664.1
ABC-2 type transport system permease protein.
  
  0.642
SDK29422.1
ABC-2 type transport system permease protein.
  
  0.642
SDK27797.1
ABC-2 type transport system permease protein.
 
 0.618
SDK16139.1
Peptide/nickel transport system permease protein.
    
 0.595
SDJ78980.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
     0.551
SDJ79232.1
ABC-2 type transport system permease protein.
 
 0.516
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.