STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ80729.1Uncharacterized conserved protein, DUF849 family. (297 aa)    
Predicted Functional Partners:
SDJ80694.1
acyl-CoA thioester hydrolase.
 
  
  0.964
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
    0.958
kynB
Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
  
    0.726
SDJ80767.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.673
SDJ80651.1
Glycine betaine/proline transport system permease protein.
       0.601
SDJ80675.1
Glycine betaine/proline transport system ATP-binding protein.
      0.601
SDJ80622.1
Glycine betaine/proline transport system substrate-binding protein.
 
     0.562
SDJ84646.1
Acyl-CoA hydrolase.
    
  0.553
SDK17365.1
Acyl-CoA hydrolase.
    
  0.553
SDJ70231.1
acyl-CoA thioester hydrolase.
    
  0.479
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.