STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ83258.1Aminoglycoside 2''-phosphotransferase. (297 aa)    
Predicted Functional Partners:
SDK06972.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.683
SDJ84437.1
MFS transporter, DHA1 family, multidrug resistance protein B.
  
     0.607
SDK48310.1
MFS transporter, DHA1 family, multidrug resistance protein B.
  
     0.585
SDJ88950.1
Predicted arabinose efflux permease, MFS family.
  
     0.538
SDJ76414.1
Acetyltransferase (GNAT) family protein.
  
   0.487
SDK27822.1
Ribosomal protein S18 acetylase RimI.
  
 
   0.462
SDJ73231.1
Thiamine pyrophosphokinase.
    
  0.452
SDJ78774.1
Ribosomal-protein-alanine N-acetyltransferase.
  
 
   0.425
SDJ79877.1
Broad specificity phosphatase PhoE.
 
    0.418
rsgA
Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
  0.414
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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