STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ84437.1MFS transporter, DHA1 family, multidrug resistance protein B. (424 aa)    
Predicted Functional Partners:
SDJ84424.1
DNA-binding transcriptional regulator, AcrR family.
 
   
 0.711
SDJ85554.1
L-threonine aldolase.
  
  
  0.697
SDK07781.1
Homoserine dehydrogenase.
    
  0.636
SDJ83258.1
Aminoglycoside 2''-phosphotransferase.
  
     0.607
SDJ78840.1
Hypothetical protein.
  
     0.574
SDJ77247.1
Acetyltransferase (GNAT) family protein.
  
     0.536
SDK06341.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
   
 
  0.528
SDJ81660.1
Ribosomal protein S18 acetylase RimI.
  
     0.513
SDK17087.1
Hypothetical protein.
  
     0.505
SDK48291.1
DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a solute-binding domain.
 
     0.448
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.