STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ97833.1Lichenan operon transcriptional antiterminator. (640 aa)    
Predicted Functional Partners:
SDJ98265.1
PTS system, mannitol-specific IIA component/PTS system, ascorbate-specific IIA component.
 
  0.982
SDJ81472.1
PTS system, mannitol-specific IIC component.
 
 
 0.949
SDK20639.1
PTS system, fructose-specific IIC component.
 
 
 0.945
SDJ98289.1
PTS system, ascorbate-specific IIB component.
 
 
 0.936
SDJ98303.1
PTS system, ascorbate-specific IIC component.
 
 
 0.935
SDK05862.1
PTS system, fructose-specific IIC component.
  
 
 0.934
SDJ81423.1
PTS system, mannitol-specific IIA component.
 
 
 0.922
SDJ97876.1
PTS system, cellobiose-specific IIB component.
 
  
 0.913
SDJ98628.1
PTS system, beta-glucosides-specific IIC component.
 
 0.890
SDJ97932.1
PTS system, cellobiose-specific IIA component.
 
  
 0.885
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.