STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ98879.1D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family. (334 aa)    
Predicted Functional Partners:
SDJ98963.1
Predicted dehydrogenase.
     0.954
SDJ86373.1
Aryl-alcohol dehydrogenase.
  
 
 0.940
SDJ98840.1
Nucleoside-diphosphate-sugar epimerase.
 
 
 0.868
SDJ98904.1
Predicted dehydrogenase.
 
     0.817
SDJ98861.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
     0.812
SDK06972.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.779
SDJ99010.1
Sugar phosphate isomerase/epimerase.
 
  
  0.762
SDJ98690.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
     0.734
SDK01444.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
   
 0.729
SDK05862.1
PTS system, fructose-specific IIC component.
    
  0.711
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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