STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK00465.1Acetylornithine aminotransferase/4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (425 aa)    
Predicted Functional Partners:
SDK00495.1
Glycine/D-amino acid oxidase.
  
 
 0.862
SDK00442.1
L-ornithine N5-oxygenase.
  
  
 0.830
SDJ69557.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.812
SDK22656.1
Aspartate aminotransferase.
  
 0.792
SDK00406.1
AraC-type DNA-binding protein.
       0.773
SDK26570.1
Arginase; Belongs to the arginase family.
 
 
 0.765
SDK00592.1
Aspartate kinase.
    
 0.756
SDK00506.1
SIS domain-containing protein.
 
   
 0.745
SDK29465.1
Predicted amidohydrolase.
  
 
 0.741
SDK07781.1
Homoserine dehydrogenase.
     
 0.721
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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