STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK01033.1Predicted dehydrogenase. (357 aa)    
Predicted Functional Partners:
SDK01021.1
Predicted dehydrogenase.
 
     0.784
SDJ98157.1
Sugar phosphate isomerase/epimerase.
 
 
  0.741
SDK01272.1
Sugar phosphate isomerase/epimerase.
 
 
  0.712
SDJ98111.1
Predicted dehydrogenase.
 
     0.647
SDK17787.1
Sugar phosphate isomerase/epimerase.
 
 
  0.614
SDJ99010.1
Sugar phosphate isomerase/epimerase.
  
 
  0.604
SDJ77978.1
5-deoxy-glucuronate isomerase.
 
  
 0.582
SDK29013.1
Lysophospholipase L1.
  
     0.566
SDJ77725.1
Sugar phosphate isomerase/epimerase.
  
 
  0.555
SDK01444.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
  
 
  0.525
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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