STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK06251.1Small, acid-soluble spore protein, alpha/beta type. (85 aa)    
Predicted Functional Partners:
SDK06232.1
Protein of unknown function.
       0.687
SDK06274.1
Hypothetical protein.
       0.565
SDK06211.1
Hypothetical protein.
       0.558
SDK30542.1
Protein of unknown function.
  
     0.540
SDK36411.1
DinB superfamily protein.
 
     0.514
SDK46567.1
DinB superfamily protein.
 
     0.482
SDJ89274.1
Hypothetical protein.
 
     0.481
SDK07645.1
Protein of unknown function.
  
     0.467
SDJ66906.1
Spore coat protein JB.
  
    0.410
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.