STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK06916.1Zinc transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. (313 aa)    
Predicted Functional Partners:
SDK06895.1
Zinc transport system ATP-binding protein.
 
 
 0.993
SDK06874.1
Zinc transport system permease protein.
 
 
 0.992
SDK06849.1
Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family.
 
  
 0.767
mntR
Mn-dependent transcriptional regulator, DtxR family; Central regulator of manganese homeostasis. Belongs to the DtxR/MntR family.
  
 
 0.690
SDK08819.1
Iron complex transport system ATP-binding protein.
 
  
 0.678
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.555
SDJ89249.1
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
    
 0.550
rpsZ
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.541
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.403
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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