STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK07559.1Peptidase family M23. (323 aa)    
Predicted Functional Partners:
SDJ72239.1
Flagellar motor switch protein FliN/FliY.
   
   0.797
SDJ74449.1
Transcription factor, RsfA family.
  
     0.770
SDK52030.1
Prespore-specific regulator.
  
     0.769
SDJ70864.1
Spore coat protein E.
  
     0.768
SDK31116.1
Outer membrane lipoprotein-sorting protein.
  
    0.760
SDK57214.1
Spore germination protein D.
  
     0.751
sspI
Small acid-soluble spore protein I (minor); Belongs to the SspI family.
  
     0.749
SDK16288.1
Spore germination protein Q.
  
     0.748
SDK55288.1
Protein YqhG of unknown function.
  
     0.742
SDK55763.1
Stage III sporulation protein AH.
  
  
 0.737
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.