STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK14422.1Glycosyl transferase family 2. (314 aa)    
Predicted Functional Partners:
SDK14447.1
Hypothetical protein.
 
     0.950
SDK14463.1
Uncharacterized membrane protein.
     
 0.794
SDK14476.1
EamA-like transporter family protein.
     
 0.792
clpP
ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
 
  
   0.726
SDJ77194.1
Phosphatidylglycerol lysyltransferase.
  
 
 0.538
SDK49389.1
UDP-glucose 4-epimerase.
 
 
  0.532
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.510
SDK35875.1
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.495
SDK13756.1
Spore maturation protein CgeB.
  
 0.491
SDJ88556.1
Undecaprenyl-diphosphatase.
    
 0.473
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.