STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK19420.1GntR family transcriptional regulator, arabinose operon transcriptional repressor. (375 aa)    
Predicted Functional Partners:
SDJ69557.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.861
SDK60374.1
PTS system, D-glucosamine-specific IIC component.
    
 0.800
SDJ98628.1
PTS system, beta-glucosides-specific IIC component.
    
 0.800
SDJ77705.1
LacI family transcriptional regulator.
  
     0.749
SDJ78373.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.732
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.708
xylB
Xylulokinase.
 
 
   0.621
SDK19483.1
L-ribulose-5-phosphate 4-epimerase.
 
   
 0.606
SDK42913.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.569
araB-2
L-ribulokinase.
 
   
 0.509
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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