STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK21779.1LytTr DNA-binding domain-containing protein. (109 aa)    
Predicted Functional Partners:
SDK21816.1
Hypothetical protein.
       0.750
SDK21801.1
YidC/Oxa1 family membrane protein insertase.
       0.746
SDK21765.1
Hypothetical protein.
       0.738
SDK21912.1
Sensor_kinase_SpoOB-type, alpha-helical domain.
 
  
 0.572
SDK21745.1
Hypothetical protein.
       0.425
SDJ77912.1
Two-component system, sensor histidine kinase YesM.
  
 
 0.406
SDJ97062.1
Sensor histidine kinase YesM.
  
 
 0.406
SDK01068.1
Two-component system, sensor histidine kinase YesM.
  
 
 0.406
SDK02949.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.406
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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