STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK28048.1DNA-binding transcriptional regulator, AcrR family. (321 aa)    
Predicted Functional Partners:
SDK27994.1
Cystine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
   
   0.534
SDK28033.1
Cystine transport system ATP-binding protein.
       0.513
SDK41993.1
TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein.
  
     0.502
SDK28003.1
Cystine transport system permease protein.
       0.497
SDK15732.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.419
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.