STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK28861.1Threonine/homoserine/homoserine lactone efflux protein. (210 aa)    
Predicted Functional Partners:
SDK28841.1
Hypothetical protein.
 
    0.853
SDK28802.1
L-asparagine transporter.
 
   
 0.790
SDJ66760.1
Sporulation and spore germination.
  
     0.551
SDK28877.1
Ethanolamine transporter; Manually curated.
       0.521
SDK46777.1
Spore coat protein CotF.
 
     0.499
SDK55508.1
Conserved membrane protein YqhR.
  
     0.484
SDJ71993.1
Chemotaxis protein CheC.
    
   0.473
SDJ72239.1
Flagellar motor switch protein FliN/FliY.
    
   0.473
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.