STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK43705.1Diguanylate cyclase (GGDEF) domain-containing protein. (630 aa)    
Predicted Functional Partners:
SDK34825.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.962
SDK35258.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.957
SDJ76805.1
HDIG domain-containing protein.
 0.952
SDJ78598.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 
 0.938
SDK07449.1
HDIG domain-containing protein.
 0.917
SDK23328.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
 0.915
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.914
SDJ85187.1
PAS domain S-box-containing protein.
  
 0.906
SDK29755.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
 0.906
SDJ84509.1
HDIG domain-containing protein.
 0.888
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.