Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK00569.1 | SDK40409.1 | SAMN05216243_1541 | SAMN05216243_3013 | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | DNA-binding regulatory protein, YebC/PmpR family. | 0.443 |
SDK00569.1 | argS | SAMN05216243_1541 | SAMN05216243_2094 | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | arginyl-tRNA synthetase. | 0.809 |
SDK00569.1 | argS-2 | SAMN05216243_1541 | SAMN05216243_2712 | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | arginyl-tRNA synthetase. | 0.838 |
SDK00569.1 | ileS | SAMN05216243_1541 | SAMN05216243_0587 | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.865 |
SDK00569.1 | metG | SAMN05216243_1541 | SAMN05216243_0016 | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.738 |
SDK00569.1 | pheT | SAMN05216243_1541 | SAMN05216243_3096 | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.889 |
SDK00569.1 | tyrS | SAMN05216243_1541 | SAMN05216243_3175 | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.747 |
SDK40409.1 | SDK00569.1 | SAMN05216243_3013 | SAMN05216243_1541 | DNA-binding regulatory protein, YebC/PmpR family. | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.443 |
SDK40409.1 | metG | SAMN05216243_3013 | SAMN05216243_0016 | DNA-binding regulatory protein, YebC/PmpR family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.555 |
SDK40409.1 | prfA | SAMN05216243_3013 | SAMN05216243_2071 | DNA-binding regulatory protein, YebC/PmpR family. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.426 |
SDK40409.1 | tsf | SAMN05216243_3013 | SAMN05216243_0486 | DNA-binding regulatory protein, YebC/PmpR family. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.459 |
SDK40409.1 | tyrS | SAMN05216243_3013 | SAMN05216243_3175 | DNA-binding regulatory protein, YebC/PmpR family. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.797 |
argS | SDK00569.1 | SAMN05216243_2094 | SAMN05216243_1541 | arginyl-tRNA synthetase. | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.809 |
argS | ileS | SAMN05216243_2094 | SAMN05216243_0587 | arginyl-tRNA synthetase. | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.935 |
argS | metG | SAMN05216243_2094 | SAMN05216243_0016 | arginyl-tRNA synthetase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.885 |
argS | pheS | SAMN05216243_2094 | SAMN05216243_3097 | arginyl-tRNA synthetase. | phenylalanyl-tRNA synthetase alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.473 |
argS | pheT | SAMN05216243_2094 | SAMN05216243_3096 | arginyl-tRNA synthetase. | phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.827 |
argS | prfA | SAMN05216243_2094 | SAMN05216243_2071 | arginyl-tRNA synthetase. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.520 |
argS | tyrS | SAMN05216243_2094 | SAMN05216243_3175 | arginyl-tRNA synthetase. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.690 |
argS-2 | SDK00569.1 | SAMN05216243_2712 | SAMN05216243_1541 | arginyl-tRNA synthetase. | methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.838 |
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