STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK55093.1Competence protein ComGF. (133 aa)    
Predicted Functional Partners:
SDK55161.1
Competence protein ComGC; Required for transformation and DNA binding.
  
  
 0.968
SDK55172.1
Competence protein ComGB.
  
  
 0.946
SDK55104.1
Hypothetical protein.
  
  
 0.940
SDK55203.1
Competence protein ComGA.
  
  
 0.938
SDK55130.1
Competence protein ComGD.
       0.800
SDK40986.1
Type IV pilus assembly protein PilA.
  
  
 0.791
SDK41002.1
Type IV pilus assembly protein PilC.
  
  
 0.781
SDK55060.1
Hypothetical protein.
       0.773
SDK41046.1
Type IV pilus assembly protein PilB.
  
  
 0.753
SDK41085.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.747
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.