STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK55721.1Stage III sporulation protein AF. (178 aa)    
Predicted Functional Partners:
SDK55747.1
Stage III sporulation protein AG.
 
  
 0.976
SDK55763.1
Stage III sporulation protein AH.
 
  
 0.976
SDK55696.1
Stage III sporulation protein AE.
 
  
 0.962
SDK55676.1
Stage III sporulation protein AD.
  
  
 0.941
SDK55632.1
Stage III sporulation protein AB.
 
  
 0.898
SDK55656.1
Stage III sporulation protein AC.
  
  
 0.867
SDK55508.1
Conserved membrane protein YqhR.
 
     0.819
SDK51700.1
Putative membrane protein, TIGR04086 family.
  
    0.817
SDK41685.1
Germination protein M.
  
    0.784
SDK41268.1
Spore coat protein YsxE.
  
    0.782
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.