orf261 protein (Capsicum annuum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

orf261

YMF19 domain-containing protein. (261 aa)

Predicted Functional Partners:

orf102e

0.546

T459_09204

0.546

Orf152a

0.470

T459_23676

0.470

T459_13821

0.470

orf132b

0.453

rpl10

0.453

T459_23610

0.453

T459_16262

0.453

nad9

0.431

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Orf152a	T459_16262	A0A2G2Y6A3	A0A2G2Z891	Uncharacterized protein.	Uncharacterized protein.	0.439
Orf152a	orf261	A0A2G2Y6A3	A0A075VVC3	Uncharacterized protein.	YMF19 domain-containing protein.	0.470
Orf152a	rpl10	A0A2G2Y6A3	A0A075VVW7	Uncharacterized protein.	Ribosomal protein L10.	0.439
T459_09204	nad9	A0A2G2ZYP9	A0A075W230	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3; Belongs to the complex I 30 kDa subunit family.	0.528
T459_09204	orf261	A0A2G2ZYP9	A0A075VVC3	Uncharacterized protein.	YMF19 domain-containing protein.	0.546
T459_13821	T459_16262	A0A2G2ZFN0	A0A2G2Z891	Uncharacterized protein.	Uncharacterized protein.	0.439
T459_13821	orf261	A0A2G2ZFN0	A0A075VVC3	Uncharacterized protein.	YMF19 domain-containing protein.	0.470
T459_13821	rpl10	A0A2G2ZFN0	A0A075VVW7	Uncharacterized protein.	Ribosomal protein L10.	0.439
T459_16262	Orf152a	A0A2G2Z891	A0A2G2Y6A3	Uncharacterized protein.	Uncharacterized protein.	0.439
T459_16262	T459_13821	A0A2G2Z891	A0A2G2ZFN0	Uncharacterized protein.	Uncharacterized protein.	0.439
T459_16262	T459_23676	A0A2G2Z891	A0A2G2YTD1	Uncharacterized protein.	Uncharacterized protein.	0.439
T459_16262	nad9	A0A2G2Z891	A0A075W230	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3; Belongs to the complex I 30 kDa subunit family.	0.752
T459_16262	orf261	A0A2G2Z891	A0A075VVC3	Uncharacterized protein.	YMF19 domain-containing protein.	0.453
T459_23610	orf261	A0A2G2YT33	A0A075VVC3	Uncharacterized protein.	YMF19 domain-containing protein.	0.453
T459_23676	T459_16262	A0A2G2YTD1	A0A2G2Z891	Uncharacterized protein.	Uncharacterized protein.	0.439
T459_23676	orf261	A0A2G2YTD1	A0A075VVC3	Uncharacterized protein.	YMF19 domain-containing protein.	0.470
T459_23676	rpl10	A0A2G2YTD1	A0A075VVW7	Uncharacterized protein.	Ribosomal protein L10.	0.439
nad9	T459_09204	A0A075W230	A0A2G2ZYP9	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.528
nad9	T459_16262	A0A075W230	A0A2G2Z891	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.752
nad9	orf102e	A0A075W230	A0A075VUF2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.528