Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T459_27566Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (361 aa)    
Predicted Functional Partners:
T459_07222
Uncharacterized protein.
      
 0.647
T459_27878
Serine/threonine-protein kinase UCNL; Belongs to the protein kinase superfamily.
  
   
 0.630
SGT1
Protein SGT1-like protein.
    
 0.580
Sgt1b
Protein SGT1-like protein A.
    
 0.572
T459_17754
Uncharacterized protein.
    
 0.564
T459_08266
AAA domain-containing protein.
      
 0.554
T459_12434
Thioredoxin Y2, chloroplastic.
    
 
 0.477
T459_28424
Response regulatory domain-containing protein.
    
 0.473
T459_04622
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.463
T459_33489
Leucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.463
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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