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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_14099Pseudouridine-5'-phosphate glycosidase. (340 aa)    
Predicted Functional Partners:
T459_09904
Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic.
   
 
  0.909
T459_26180
Putative uridine nucleosidase 2.
  
 
  0.906
T459_22383
Putative uridine nucleosidase 2.
  
 
  0.906
T459_23019
Uracil phosphoribosyltransferase.
     
  0.900
T459_31802
Uncharacterized protein.
  
   
 0.697
T459_04932
PfkB domain-containing protein.
  
   
 0.647
ADK1
Adenosine kinase.
  
 
 0.544
T459_27128
Fructokinase-like 2, chloroplastic.
  
 
 0.544
T459_25759
Adenosine kinase.
  
 
 0.544
T459_09237
Fructokinase-1; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.544
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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