STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_10232Pentatricopeptide repeat-containing protein. (864 aa)    
Predicted Functional Partners:
T459_25498
Pentatricopeptide repeat-containing protein.
      
0.506
T459_13119
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
  
 
  0.466
T459_03119
Uncharacterized protein.
  
     0.455
T459_10622
Uncharacterized protein.
  
     0.446
T459_02313
Uncharacterized protein.
  
     0.446
T459_01544
Uncharacterized protein.
  
     0.434
T459_00929
Putative inactive shikimate kinase like 2, chloroplastic.
  
     0.426
T459_15303
Transcription factor FAMA.
  
     0.422
T459_05630
Smr domain-containing protein.
      
 0.412
T459_02971
Flowering-promoting factor 1.
  
     0.411
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.