Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T459_26870Serine/threonine-protein kinase PRP4-like protein. (1013 aa)    
Predicted Functional Partners:
T459_33862
Pinin_SDK_memA domain-containing protein.
   
  0.952
T459_27687
Uncharacterized protein.
   
  0.939
T459_20143
Pre-mRNA-processing factor 6.
  
 
 
 0.935
T459_23274
PWI domain-containing protein.
   
 
 0.833
T459_14306
Uncharacterized protein.
   
 
 0.833
T459_01199
Cwf21 domain-containing protein.
   
 0.818
T459_26402
Splicing factor 3B subunit 1.
   
 
 0.806
T459_26342
Uncharacterized protein.
   
 
 0.806
T459_26403
Uncharacterized protein.
   
 
 0.806
T459_06556
Protein CROWDED NUCLEI 4.
   
 
  0.784
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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