STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_27418Long chain base biosynthesis protein 2a. (517 aa)    
Predicted Functional Partners:
T459_21387
Long chain base biosynthesis protein 1a.
  
0.940
T459_11846
Long chain base biosynthesis protein 1.
  
0.940
T459_22010
Uncharacterized protein.
    
 0.857
T459_30666
Uncharacterized protein.
    
 0.857
T459_00053
Uncharacterized protein.
    
 0.857
T459_17992
Biotin synthase.
  
  
 0.797
T459_13334
3-dehydrosphinganine reductase TSC10B.
     
 0.760
T459_01260
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.744
T459_24978
Sphingolipid delta(4)-desaturase DES1-like; Sphingolipid-delta-4-desaturase required for the biosynthesis of delta-4-unsaturated sphingolipids and derivatives.
   
  
 0.694
T459_01536
L-idonate 5-dehydrogenase.
  
 
 0.677
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.