T459_26104 protein (Capsicum annuum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T459_26104

Ubiquitin carboxyl-terminal hydrolase 12. (415 aa)

Predicted Functional Partners:

T459_31412

0.748

T459_02418

0.748

T459_20688

0.702

T459_00274

0.684

T459_22021

0.643

T459_09681

0.573

T459_22035

0.573

T459_19363

0.573

T459_20548

0.573

T459_20546

0.573

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T459_00274	T459_26104	A0A2G3ADR5	A0A2G2YMP0	GMP synthase [glutamine-hydrolyzing].	Ubiquitin carboxyl-terminal hydrolase 12.	0.684
T459_02418	T459_09681	A0A2G3AJW6	A0A1U8E394	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-60S ribosomal protein L40-1.	0.950
T459_02418	T459_19363	A0A2G3AJW6	A0A2G2Z1R1	Ubiquitin-40S ribosomal protein S27a.	F-box domain-containing protein.	0.941
T459_02418	T459_20546	A0A2G3AJW6	A0A2G2Z4Z1	Ubiquitin-40S ribosomal protein S27a.	F-box domain-containing protein.	0.941
T459_02418	T459_20548	A0A2G3AJW6	A0A2G2Z4V9	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.941
T459_02418	T459_20688	A0A2G3AJW6	A0A2G2Z5A0	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.959
T459_02418	T459_22035	A0A2G3AJW6	A0A2G2YYD4	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-60S ribosomal protein L40.	0.950
T459_02418	T459_26104	A0A2G3AJW6	A0A2G2YMP0	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin carboxyl-terminal hydrolase 12.	0.748
T459_09681	T459_02418	A0A1U8E394	A0A2G3AJW6	Ubiquitin-60S ribosomal protein L40-1.	Ubiquitin-40S ribosomal protein S27a.	0.950
T459_09681	T459_20688	A0A1U8E394	A0A2G2Z5A0	Ubiquitin-60S ribosomal protein L40-1.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.880
T459_09681	T459_26104	A0A1U8E394	A0A2G2YMP0	Ubiquitin-60S ribosomal protein L40-1.	Ubiquitin carboxyl-terminal hydrolase 12.	0.573
T459_09681	T459_31412	A0A1U8E394	A0A1U8F749	Ubiquitin-60S ribosomal protein L40-1.	Ubiquitin-40S ribosomal protein S27a.	0.994
T459_19363	T459_02418	A0A2G2Z1R1	A0A2G3AJW6	F-box domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.941
T459_19363	T459_20688	A0A2G2Z1R1	A0A2G2Z5A0	F-box domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.880
T459_19363	T459_26104	A0A2G2Z1R1	A0A2G2YMP0	F-box domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase 12.	0.573
T459_19363	T459_31412	A0A2G2Z1R1	A0A1U8F749	F-box domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.941
T459_20546	T459_02418	A0A2G2Z4Z1	A0A2G3AJW6	F-box domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.941
T459_20546	T459_20688	A0A2G2Z4Z1	A0A2G2Z5A0	F-box domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.880
T459_20546	T459_26104	A0A2G2Z4Z1	A0A2G2YMP0	F-box domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase 12.	0.573
T459_20546	T459_31412	A0A2G2Z4Z1	A0A1U8F749	F-box domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.941