STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_24196Casein kinase I isoform epsilon. (691 aa)    
Predicted Functional Partners:
T459_13331
Uncharacterized protein.
    
 0.729
T459_13329
Uncharacterized protein.
    
 0.729
T459_03382
Serine/threonine-protein kinase rio2.
    
 0.711
T459_13479
Bms1-type G domain-containing protein.
    
 0.636
T459_03892
Serine racemase.
    
 0.602
T459_18407
RNA-binding protein PNO1.
    
 0.538
T459_25494
UBP-type domain-containing protein.
      
 0.505
T459_10131
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
      
 0.505
T459_00324
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
     
 0.482
T459_07794
Cryptochrome-1.
    
 0.469
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.