Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T459_24296Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (2141 aa)    
Predicted Functional Partners:
T459_10291
RNA helicase.
      
 0.548
T459_20778
RNA helicase.
      
 0.548
T459_05689
RNA helicase.
      
 0.547
T459_11504
Uncharacterized protein.
      
 0.546
T459_19640
RNA helicase.
      
 0.474
T459_07554
Nucleotide diphosphatase.
      
 0.470
T459_01399
CRM domain-containing protein.
      
 0.463
T459_12494
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
      
 0.462
T459_25176
Endoribonuclease Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.
    
 
 0.461
T459_33496
Cathepsin B; Belongs to the peptidase C1 family.
      
 0.459
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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