Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T459_17885Protein kinase domain-containing protein. (347 aa)    
Predicted Functional Partners:
T459_14687
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
   
 
 0.811
T459_14590
Uncharacterized protein.
    
   0.534
T459_19987
Uncharacterized protein.
    
   0.534
T459_23940
Uncharacterized protein.
    
   0.534
T459_20800
Uncharacterized protein.
    
   0.534
T459_07580
Retinoblastoma-related protein.
    
 
 0.531
T459_06868
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
   0.525
T459_33740
Peptidyl-prolyl cis-trans isomerase.
    
  0.501
T459_04185
Peptidyl-prolyl cis-trans isomerase.
    
  0.501
T459_17771
PWWP domain-containing protein.
    
 0.457
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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