STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T459_14212Protein kinase domain-containing protein. (191 aa)    
Predicted Functional Partners:
T459_32678
Cyclin-T1-4; Belongs to the cyclin family.
    
 0.729
T459_08098
Uncharacterized protein; Belongs to the cyclin family.
    
 0.729
T459_00260
Cyclin-dependent kinase D-1; Belongs to the protein kinase superfamily.
    
 0.665
T459_14193
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.596
T459_09076
Homogentisate solanesyltransferase, chloroplastic.
     
  0.588
T459_14664
4-hydroxyphenylpyruvate dioxygenase.
     
  0.588
T459_33006
Cyclin-H1-1; Belongs to the cyclin family.
    
 0.588
T459_16702
Hsp90 co-chaperone CDC37.
   
 
 0.533
T459_12000
E3 ubiquitin protein ligase.
    
 
 0.515
T459_24617
Nuclear cap-binding protein subunit 1.
   
   0.491
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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