Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T459_08982ABC transporter domain-containing protein. (205 aa)    
Predicted Functional Partners:
T459_16566
ABC transporter C family member 10.
 
  
  0.856
T459_08313
ABC transporter C family member 4.
     
  0.855
T459_30016
ABC transporter domain-containing protein.
 
  
  0.852
T459_20881
ABC transporter C family member 3.
     
  0.784
T459_16567
ABC transporter domain-containing protein.
     
  0.749
T459_09533
ABC transporter C family member 10.
     
  0.749
T459_01141
ABC transporter domain-containing protein.
  
 
  0.599
T459_01137
ABC transporter domain-containing protein.
  
 
  0.587
T459_05273
ABC transporter domain-containing protein.
  
 
  0.486
T459_19755
Phospholipase A2-beta.
      
 0.448
Your Current Organism:
Capsicum annuum
NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013
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